<?xml version="1.0" encoding="utf-8" ?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom" xmlns:r="https://r-universe.dev"><channel><title>ngsfc.r-universe.dev</title><link>https://ngsfc.r-universe.dev</link><description>Recent package updates in ngsfc</description><generator>R-universe</generator><image><url>https://github.com/ngsfc.png</url><title>R packages by ngsfc</title><link>https://ngsfc.r-universe.dev</link></image><lastBuildDate>Tue, 28 Apr 2026 13:05:44 GMT</lastBuildDate><item><title>[bioc] scGraphVerse 1.3.0</title><author>francesco.cecerengs@gmail.com (Francesco Cecere)</author><description>A package for inferring, comparing, and visualizing gene
networks from single-cell RNA sequencing data. It integrates
multiple methods (GENIE3, GRNBoost2, ZILGM, PCzinb, and JRF)
for robust network inference, supports consensus building
across methods or datasets, and provides tools for evaluating
regulatory structure and community similarity. GRNBoost2
requires Python package 'arboreto' which can be installed using
init_py(install_missing = TRUE). This package includes adapted
functions from ZILGM (Park et al., 2021), JRF (Petralia et al.,
2015), and learn2count (Nguyen et al. 2023) packages with
proper attribution under GPL-2 license.</description><link>https://github.com/r-universe/bioc/actions/runs/38877674102</link><pubDate>Tue, 28 Apr 2026 13:05:44 GMT</pubDate><r:package>scGraphVerse</r:package><r:version>1.3.0</r:version><r:status>success</r:status><r:repository>https://bioc.r-universe.dev</r:repository><r:upstream>https://github.com/bioc/scGraphVerse</r:upstream><r:article><r:source>case_study.Rmd</r:source><r:filename>case_study.html</r:filename><r:title>scGraphVerse Case Study: B-cell GRN Reconstruction</r:title><r:created>2025-05-05 13:07:47</r:created><r:modified>2025-10-12 13:21:53</r:modified></r:article><r:article><r:source>simulation_study.Rmd</r:source><r:filename>simulation_study.html</r:filename><r:title>scGraphVerse Case Study: Zero-Inflated Simulation and GRN Inference</r:title><r:created>2025-05-05 13:07:47</r:created><r:modified>2025-10-12 13:21:53</r:modified></r:article></item></channel></rss>